miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|198015720|gb|FL757746.1|FL757746 ACCCGGAGAGGTTCTTCCTGGAGATGGTCCCCGACCGGTTCACCACCACGCTGGGGCTGGCCCTCATCGAGGTGCTGTCC
AACCACACCTCCGACGAGCTTTACCTGGGCCAGCGCGCGACGTCGTCGTGGACGGACGACGGCAAGGTGCTACAGCTGCT
GGACGGGTTCCGGGAGGAGCTCCGGAGGGTGGAGAAGCGGGTGGCGGAGAGGAACAGGGACCCTCGGCTCAAGAACCGGA
GGGGCCCGGCCAAGGTGCCGTACACGCTGCTGTTCCCCGACGTCGGAAACGTCGGCGGCAAGGAGAAGGGGATCACCGGC
AAAGGGATACCCAACAGCGTCTCCATATGATACAATACAGCTGGACTGTATATACATACTGCTCCCTCCGTTCCAAAATT
ATTAATCATTCAAGTTTTATTTAAATACATACACCCAGGAAAACTAAAGTGACTAATAATTTAGGACGGGGGGAGTATAT
ATGAATGTTTCTTGCATTTGGTTGCTTGTCGTTTTATTCTATTGAATGGAGGGATGTGATTACTACC




Most similar to sp|Q76I22|LOX1_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q76I22|LOX1_ORYSJ Lipoxygenase 1 OS=Oryza sativa subsp. japonica
            GN=Os03g0699700 PE=2 SV=2
          Length = 863

 Score =  112 bits (279), Expect = 2e-24
 Identities = 52/115 (45%), Positives = 71/115 (61%)
 Frame = +3

Query: 3    PERFFLEMVPDRFTTTLGLALIEVLSNHTSDELYLGQRATSSWTDDGKVLQLLDGFREEL 182
            PE+FF+  +  +F T LG++LIE+LS H++DE+YLGQR T  WT D K L+    F  +L
Sbjct: 749  PEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPEWTSDPKALEAFKRFSRQL 808

Query: 183  RRVEKRVAERNRDPRLKNRRGPAKVPYTLLFPDVGNVXXXXXXXXXXXXPNSVSI 347
              +E +V   N+DP LKNR GPA  PYTL+FP+  +             PNS+SI
Sbjct: 809  VEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863